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黑客马拉松

什么是黑客马拉松?

在 ImageJ 的背景下,hackathon 是一次编码热潮,或者如果你愿意的话,是一次为期一到两周的头脑风暴会议,具有编程技能的科学家坐在一起,在低分心、高能量的环境中工作,以推进他们的软件方面的研究。通常情况下,与没有黑客马拉松相比,结果的完成速度要快得多(阅读:几天而不是几周或几个月),因为这种环境非常适合与具有相似思维的科学家讨论先进的想法,并且想法可以更快地萌芽。有时,如果没有黑客马拉松就不可能取得成果。

为什么?

首先,黑客马拉松有趣。参与者喜欢他们正在做的事情,并且很少有同样的机会就他们正在进行的研究互相交谈和启发。

此外,黑客马拉松是不受干扰地专注于特定主题的完美借口。在黑客马拉松中完成了很多(见右图!)。

术语黑客马拉松的起源

该术语源自hack的本义,即使用或改进技术系统的巧妙且不可预见的方式。

不清楚 Sun 的营销团队还是 OpenBSD 是第一,将 hackmarathon 组合起来形成 hackathon

自此之后,OpenBSD 每年都会举办黑客马拉松,期间 OpenBSD 得到了长足的进步。

2007 年,第一届围绕神经科学的黑客马拉松在HHMI Janelia Research Campus举行。从某种意义上说,它可以被视为斐济首届黑客马拉松,因为斐济是在黑客马拉松之后诞生的,如果没有它,斐济可能不会发生。

ImageJ 黑客马拉松

ImageJ 多年来从许多黑客马拉松中受益:

什么时候

在哪里

WHO

话题

2007年夏季

HHMI 珍妮莉亚
Ashburn, VA, USA

Albert Cardona, Benjamin Schmid, Gregory Jefferis...Hanchuan Peng, Johannes Schindelin, Stephan Preibisch, Stephan Saalfeld, Wayne Rasband, Arnim Jenett, Julie Simpson, Torsten Rohlfing, Yuriy Mishchenko

神经科学

2008 Apr 21 -
2008 Apr 30

MPI-CBG
Dresden, Germany

Albert Cardona, Benjamin Schmid, Cornelius Sicker...Daniel James White, Erwin Frise, Jean-Yves Tinevez, Johannes Schindelin, Mark Hiner, Stephan Preibisch, Stephan Saalfeld, Pavel Tomancak

斐济

2008 Dec 8 -
2008 Dec 13

INI
Zürich, Switzerland

?

斐济

2009 Mar 23 -
2009 Apr 03

MPI-CBG
Dresden, Germany

Johannes Schindelin, Albert Cardona, Jean-Yves Tinevez...Benjamin Schmid, Ignacio Arganda-Carreras, Daniel James White, Mark Hiner, Pavel Tomancak, Stephan Preibisch, Stephan Saalfeld, Raju Tomer, Misha Kudryashev

分割

2010 Mar 14 -
2010 Mar 27

欧洲分子生物学实验室
Heidelberg, Germany

Albert Cardona, Stephan Saalfeld, Benjamin Schmid...Kota Miura, Curtis Rueden, Johannes Schindelin, Ignacio Arganda-Carreras, Larry Lindsey, Mark Hiner, Stephan Preibisch, Grant Harris, Verena Kaynig-Fittkau

斐济

2010 Oct 12 -
2010 Oct 23

劳伦斯伯克利国家实验室
Berkeley CA, USA

Erwin Frise, Johannes Schindelin

跑步微观经理里面斐济

2011 Jan 27 -
2011 Feb 13

威德
Madison, WI, USA

Ignacio Arganda-Carreras, Paul Barber, Albert Cardona...Barry DeZonia, Arthur Edelstein, Adam Fraser, Erwin Frise, Aivar Grislis, Grant Harris, Mark Hiner, Luis Ibanez, Lee Kamentsky, Larry Lindsey, Melissa Linkert, Mark Hiner, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Johannes Schindelin, Benjamin Schmid, Pavel Tomancak, Kevin Eliceiri, Rick Lentz, Mark Rowley

多维可视化

2011 Dec 9 -
2011 Dec 19

MPI-CBG
Dresden, Germany

Jean-Marie Burel, Stephane Dallongeville, Barry DeZonia...Christian Birkhold (Dietz), Michael Doube, Fabrice de Chaumont, Erwin Frise, Martin Horn, Daniel James White, Tom Kazimiers, Alexander Krull, Melissa Linkert, Mark Hiner, Josh Moore, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Johannes Schindelin, Benjamin Schmid, Pavel Tomancak, Peter Gabriel Pitrone, Kevin Eliceiri, Fernando Carrilo, Jiri Matas, Jurgen Mayer

互操作性

2012年10月

康斯坦茨大学
Konstanz, Germany

Martin Horn, Christian Birkhold (Dietz), Tobias Pietzsch...Johannes Schindelin

克尼姆+斐济

2013 Jan 22 -
2013 Jan 25

基因定位
Madison, WI, USA

Matt McCormick, Curtis Rueden, Johannes Schindelin...Mark Hiner

SCIFIO ImageIO plugin

2013 apr 14 -
2013 Apr 18

基因定位
Madison, WI, USA

Ignacio Arganda-Carreras, Johannes Schindelin, Curtis Rueden

可训练的 Weka 分割

2013 Apr 27 -
2013 May 3

基因定位
Madison, WI, USA

Stephan Preibisch, Tobias Pietzsch, Curtis Rueden...Johannes Schindelin, Barry DeZonia, Mark Hiner, Aivar Grislis

图像库2

2013 Sep 9 -
2013 Sep 13

巴斯德研究所
Paris France

Tobias Pietzsch, Jean-Yves Tinevez

马穆特, 大数据查看器

2013 Nov 14 -
2013 Nov 27

基因定位
Madison, WI, USA

Christian Birkhold (Dietz), Johannes Schindelin, Curtis Rueden

克尼姆+图像J2

2014 Mar 4 -
2014 Mar 13

康斯坦茨大学
Konstanz, Germany

Curtis Rueden, Johannes Schindelin, Christian Birkhold (Dietz)...Martin Horn

ImageJ 操作|- valign="顶部" |

2014 Mar 20 -
2014 Mar 21

基因定位
Madison, WI, USA

Jean-Marie Burel, Peter Walczysko, Curtis Rueden

ImageJ-OMERO

2014 Jul 7 -
2014 Jul 10

基因定位
Madison, WI, USA

Mark Tsuchida, Chris Weisiger, Johannes Schindelin...Luke Stuyvenberg, Curtis Rueden, Mark Hiner

微观经理开放式SPIM

2014 Sep 14 -
2014 Sep 18

基因定位
Madison, WI, USA

Christian Birkhold (Dietz), Brian Northan, Mark Hiner...Curtis Rueden, Aparna Pal, Yuming Liu, Alison Walter, Ginger Pocock

ImageJ 操作 + 克尼姆

2014 Oct 13 -
2014 Oct 17

基因定位
Madison, WI, USA

Tobias Pietzsch, Stephan Preibisch, Stephan Saalfeld...Johannes Schindelin, Curtis Rueden, Mark Hiner

图像库2

2015 Jan 19 -
2015 Jan 27

弗雷劳姆
Konstanz, Germany

Christian Birkhold (Dietz), Curtis Rueden, Mark Hiner...Lee Kamentsky, Tobias Pietzsch, Florian Jug, Johannes Schindelin, Ignacio Arganda-Carreras, Gabriel Einsdorf, Daniel Seebacher, Kevin Mader, Andreas Graumann, Jonathan Hale, Tim-Oliver Buchholz, Patrick Winter, Andreas Burger, Tobias Kötter

ImageJ 操作 + 克尼姆 + 细胞分析仪+ 更多

2015 Apr 12 -
2015 Apr 17

HHMI 珍妮莉亚
Ashburn, VA, USA

Stephan Preibisch, Tobias Pietzsch, Stephan Saalfeld...Pavel Tomancak

多视图重建大数据查看器

2015 June 29 -
2015 July 3

BIMSB/MDC
Berlin, Germany

Stephan Preibisch, Christian Birkhold (Dietz), Mario Emmenlauer...Stephan Janosch

并行化多视图重建
and integration with ImageJ Ops & KNIME

2015 Jul 27 -
2015 Jul 31

HHMI 珍妮莉亚
Ashburn, VA, USA

Stephan Saalfeld, Curtis Rueden, Mark Hiner...Tobias Pietzsch, Tom Kazimiers, Burkhard Höckendorf, Fernando Amat, Phillip Keller

科幻小说性能和通用性

2015 Sep 05 -
2015 Sep 15

威德 + 基因定位
Madison, WI, USA

Curtis Rueden, Mark Hiner, Christian Birkhold (Dietz)...Tobias Pietzsch, Stephan Saalfeld, Brian Northan, Florian Jug, Matt McCormick, Jay Warrick, Tiago A. Ferreira, Jan Brocher, Ellen TA Dobson, Alison Walter, Leon Yang, Yuming Liu, Guneet Singh Mehta, Marcel Austenfeld, Karl Bellve, Alex Rigano, Kota Miura, Mark Tsuchida, Chris Weisiger

图像J2学习马拉松+ImageJ 操作

2016 Jan 12 -
2016 Jan 22

KNIME 康斯坦茨地区办事处
Konstanz, Germany

Christian Birkhold (Dietz), Curtis Rueden, Mark Hiner...Martin Horn, Tobias Pietzsch, Florian Jug, Loic Royer, Ulrik Günther, Robert Haase, Stefan Helfrich, Kevin Mader, Kyle Harrington, 简·埃格林格, Thomas Re, Tim-Oliver Buchholz, Jonathan Hale, Daniel Seebacher, Patrick Winter, Alexander Fillbrunn, Nico Hoffmann, Timo Sachsenberg, Julianus Pfeuffer, Temesgen H. Dadi

克尼姆图像处理

2016 Jun 19 -
2016 Jun 28

HHMI 珍妮莉亚
Ashburn, VA, USA

Stephan Saalfeld, Tobias Pietzsch, Curtis Rueden...Christian Birkhold (Dietz), Kyle Harrington

元数据丰富的图像

2016 Jul 5 -
2016 Jul 14

KNIME 康斯坦茨地区办事处
Konstanz, Germany

Christian Birkhold (Dietz), Patrick Winter, Tobias Pietzsch...Ulrik Günther, Curtis Rueden, Martin Horn, Stefan Helfrich, Kyle Harrington, Richard Domander, Kevin Mader, Andreas Burger, Marcel Wiedenmann, Simon Schmid, Joshy Cyriac, Jonathan Hale, Alexander Fillbrunn, 简·埃格林格, Tim-Oliver Buchholz, Stefano Woerner, Cyril Mongis, David Hörl, Nico Hoffmann

克尼姆图像处理+3D可视化

2016 Dec 6 -
2016 Dec 16

MPI-CBG
Dresden, Germany

Florian Jug, Tobias Pietzsch, Pavel Tomancak...Curtis Rueden, Stephan Saalfeld, Philipp Hanslovsky, Kyle Harrington, Richard Domander, Jean-Yves Tinevez, Christian Birkhold (Dietz), Patrick Winter, Ulrik Günther, Loic Royer, Robert Haase, HongKee Moon, Tim-Oliver Buchholz, Marcel Wiedenmann, David Hörl, Klim Kolyvanov, Matthias Arzt, Vladimír Ulman, Carsten Haubold, Jonas Massa

斐济 & 克尼普

2017 Feb 21 -
2017 Feb 26

基因定位
Madison, WI, USA

Tobias Pietzsch, Stephan Saalfeld, Christian Birkhold (Dietz)...Curtis Rueden, Alison Walter

图像库2

2017 Jun 7 -
2017 Jun 14

基因定位
Madison, WI, USA

Christian Birkhold (Dietz), Curtis Rueden

ImageJ 操作

2017 Sep 20 -
2017 Sep 29

KNIME 康斯坦茨地区办事处
Konstanz, Germany

Christian Birkhold (Dietz), Matthias Arzt, Tim-Oliver Buchholz...简·埃格林格, Gabriel Einsdorf, Alexander Fillbrunn, Jon Fuller, Jonathan Hale, Carsten Haubold, Stefan Helfrich, Martin Horn, Florian Jug, David Kolb, Klim Kolyvanov, Kevin Mader, Julianus Pfeuffer, Tobias Pietzsch, Mangal Prakash, Stephan Preibisch, Jonas Probst, René Rahn, Curtis Rueden, Simon Schmid, Deborah Schmidt, Vladimír Ulman, Marcel Wiedenmann, Benjamin Wilhelm, Patrick Winter

克尼姆图像处理,ImageJ 操作, 伊拉斯蒂克

2017 Oct 17 -
2017 Oct 18

康涅狄格大学健康
Farmington, CT, USA

Jim Schaff, Curtis Rueden

虚拟单元 + 图像J2

2017 Dec 4 -
2017 Dec 15

MPI-CBG
Dresden, Germany

Florian Jug, Tobias Pietzsch, Pavel Tomancak...Curtis Rueden, Philipp Hanslovsky, Kyle Harrington, Richard Domander, Jean-Yves Tinevez, Christian Birkhold (Dietz), Ulrik Günther, Loic Royer, Robert Haase, HongKee Moon, Tim-Oliver Buchholz, Marcel Wiedenmann, David Hörl, Klim Kolyvanov, Matthias Arzt, Vladimír Ulman, Carsten Haubold, Petr Bainar, Alison Walter

斐济 & 克尼普

2018 Apr 22 -
2018 May 2

爱达荷大学
Moscow, ID, USA

Kyle Harrington, Stephan Saalfeld, Christian Birkhold (Dietz)...Curtis Rueden, Matthias Arzt, Tobias Pietzsch, Loic Royer, Brian Northan, Ulrik Günther, Mark Tsuchida, Robert Wiese

科学视图

2018 May 16 -
2018 May 18

镀锌
San Francisco, CA, USA

Dan Toloudis (AICS), Dyche Mullins (UCSF), Lisa Harrylock (AICS)...Tom Goddard (UCSF), Molly Maleckar (AICS), Tom Ferrin (UCSF), Graham Johnson (AICS), Samuel Lord (UCSF/HHMI), Basu Chaudhuri (AICS), Ambrose Carr (CZI), Megan Riel-Megan (AICS), Jeremy Freeman (CZI), Dave Williams (AICS), Nicholas Sofroniew (CZI), Curtis Rueden, Arne Bakker (CZI), Syuan-Ming Guo (CZ Biohub), Andréa Clavijo (CZI), Deep Ganguli (CZI), Shalin Mehta (CZ Biohub), Tony Tung (CZI), Sarah Kefayati (CZ Biohub), Anitha Krishnan (CZ Biohub), Allen Goodman, Norah Klintberg (CZ Biohub), Eric Perlman (Johns Hopkins), Oana Carja (CZ Biohub) Benny Lin (U Texas Austin), Jeremy Maitlen-Shephard (Google)

JavaScript、Python + Java 中的生物图像分析

2018 Oct 31 -
2018 Nov 06

基因定位
Madison, WI, USA

Christian Birkhold (Dietz), Tobias Pietzsch, Mark Tsuchida...Curtis Rueden

ImgLib2,微管理器

2018 Dec 09 -
2018 Dec 14

MPI-CBG
Dresden, Germany

Curtis Rueden, Carsten Haubold, Christian Birkhold (Dietz)...Gabriel Einsdorf, Benjamin Wilhelm, Marcel Wiedenmann, Matthias Arzt, Deborah Schmidt, Tobias Pietzsch, Ulrik Günther, Gabriella Turek

黑客攻击

2019 Jan 17 -
2019 Jan 29

IT4创新
Ostrava, Czechia

Florian Jug, Tobias Pietzsch, Pavel Tomancak...Christian Birkhold (Dietz), Tim-Oliver Buchholz, Marcel Wiedenmann, Matthias Arzt, Vladimír Ulman, Petr Bainar, Alison Walter, Gabriel Einsdorf, David Kolb, Mangal Prakash, Deborah Schmidt, Benjamin Wilhelm, John Bogovic, Nicolas Chiaruttini, Jana Klímová, Jan Kožusznik, Michal Krumnikl, Manan Lalit, Emil Melnikov, Pavel Moravec, Václav Svatoň, Christian Tischer, Gabriella Turek, Tomas Vicar, Marwan Zouinkhi

并行化和 HPC

2019 Sep 18 -
2019 Sep 24

KNIME 康斯坦茨地区办事处
Konstanz, Germany

Michael Crusoe, Stefan Verhoeven, Curtis Rueden...Christian Birkhold (Dietz), Tobias Pietzsch, Marcel Wiedenmann, Daniel Bogenrieder, Deborah Schmidt, Benjamin Wilhelm, Adrian Nembach, Laurent Thomas, Kefang Ding, Christian Albrecht, Gabriel Einsdorf, David Kolb

克尼姆

2019 Dec 9 -
2019 Dec 18

德累斯顿CSB
Dresden, Germany

Philipp Hanslovsky, Curtis Rueden, Tobias Pietzsch...Ulrik Günther, Tim-Oliver Buchholz, Florian Jug, Matt McCormick, Stefan Helfrich, Robert Haase, Marcel Wiedenmann, Emil Melnikov, Wei Ouyang, Vladimír Ulman, Pavel Tomancak, Uwe Schmidt, Deborah Schmidt, Benjamin Wilhelm, Nicolas Chiaruttini, Mangal Prakash, Maksim Novikov, Christian Tischer, Manan Lalit, Bob Hanson, Adrian Wolny, Gabriella Turek, Tomas Vicar, David Ackerman, Lars Grüter, Mats Moskopp, Arrate Muñoz Barrutia

Python+斐济

2021 Jun 1 -
2021 Aug 31

线上(集镇)主办
IT4创新

Pavel Tomancak, Jan Kožusznik, Michal Krumnikl...Pavel Moravec, Vladimír Ulman, Dimitrios Stefanos Velissariou, Václav Svatoň, Christian Tischer, Tobias Pietzsch, Curtis Rueden, 简·埃格林格, Stephan Saalfeld, Deborah Schmidt, Wei Ouyang, John Bogovic, Mark Tsuchida, Jean-Yves Tinevez, Lee Kamentsky, Josh Moore, Jan Brocher, Sébastien Besson, Kyle Harrington, Alan Brooks, Jean-Marie Burel, Nils Norlin, Estibaliz Gomez de Mariscal

维基百科, 斐济

2022 Sep 5 -
2022 Sep 9

捷克布拉格
organized by
IT4创新

Ko Sugawara, Christian Tischer, Tobias Pietzsch...Jan Kožusznik, Vladimír Ulman

斐济+NGFF

2022 Oct 3 -
2023 Oct 7

基因定位
Madison, WI, USA

Nodar Gogoberidze, Mark Hiner, Curtis Rueden...Edward Evans, Gabriel Selzer

细胞分析仪+PyImageJ

2022 Dec 5 -
2022 Dec 8

基因定位
Madison, WI, USA

Wei Ouyang, Mark Hiner, Curtis Rueden, Edward Evans

云中的 ImageJ

2023 Feb 6 -
2023 Feb 10

人类科技城
Milan, Italy

Beatriz Serrano-Solano, Carlos Garcia, Caterina Fuster...Christian Tischer, Curtis Rueden, Daniel Sage, David Ackerman, Edward Evans, Fiona Inglis, Florian Jug, Igor Zubarev, Ivan Estevez, Jean-Yves Tinevez, Joran Deschamps, Lucia Moya, Mark Hiner, Mark Kittisopikul, Pete Bankhead, Stephan Saalfeld, Tobias Pietzsch, Wei Ouyang

Java 深度学习模型的可访问性

2023 Apr 15 -
2023 Apr 21

基因定位
Madison, WI, USA

Jean-Yves Tinevez, Tobias Pietzsch, Curtis Rueden...Mark Hiner, Edward Evans, Gabriel Selzer

3D TrackMate

2023 Jun 5 -
2023 Jun 9

科学生命实验室
Stockholm, Sweden

Wei Ouyang, Carlos Garcia, Caterina Fuster...Curtis Rueden, Jonas Klotz, Matt McCormick, Nodar Gogoberidze, Benjamin Wilhelm, Craig Russell, Andréa Papaleo, Simon Franchini, Tomaz Fogaça Vieira, Sebastian Soyer, Weize Xu, Iván Hidalgo, Vera Galinova

用于人工智能驱动的生物图像分析的网络和云基础设施

2023 Jun 10 -
2023 Jun 17

德累斯顿CSB
Dresden, Germany

Ulrik Günther, Kyle Harrington, Curtis Rueden...Giuseppe Barbieri, Lukas Tempel, Jan Tiemann, Tobias Pietzsch, Ella Hierche, Samuel Pantze, Vladimír Ulman, Justin Buerger, Aryaman Gupta, Druhin Abrol, Wissal Salhi, Chiara Notaro

风景 & 科学视图黑客马拉松 2023:让我们将其实现 1.0

2023 Jul 21 -
2023 Jul 22

旧金山费尔蒙特酒店
San Francisco, CA, USA

Juan Nunez-Iglesias, Grzegorz Bokota, Andy Sweet...Lorenzo Gaifas, Kevin Yamauchi, Genevieve Buckley, Loic Royer, Joel Lüthi, Kyle Harrington, Curtis Rueden

Post-CZI-Imaging-2023 黑客马拉松:纳帕里科学视图

2023 Oct 10 -
2023 Oct 18

中电国际贸易有限公司 MU
Brno, Czechia

Nils Norlin, Vladimír Ulman, Stephan Preibisch...Curtis Rueden, Léo Leplat, Michael Innerberger, Marwan Zouinkhi, Eugene Katrukha, Alan O'Callaghan, Ko Sugawara, Giuseppe Barbieri, Samuel Pantze, Tobias Pietzsch, Eric Trautman, Ulrik Günther, Deborah Schmidt, Carlos Garcia, Stefan Hahmann, Gabor Kovacs, Wojciech Jesionek, Johannes Girstmair, Stephan Saalfeld

图像库2大数据查看器