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MVR-定义数据集

选择数据集类型

Mvr define1

数据集划分清晰类型:

-图像堆栈(LOCI Bioformats) - to open non TIFF images -图像堆栈(ImageJ Opener) - use this to open TIFF and zipped TIFFS

  • Zeiss Lightsheet Z.1 数据集
    • experimental way of opening Zeiss data

      定义数据集 1/3

此对话框指定您的数据集的组成:

  • 时间点
  • 渠道
  • 方向照明
  • 角度

Mvr define2

定义数据集 2/3

此对话框询问您的几个事实:

  • 图像目录
  • 图片文件模式
    • there are 3 different variables. They are used to identify the images. All of them can have leading zeros, e.g. {aaa} for a angle of 045 degrees or {tttt} for 0014 as a time point
      • {t} - time points
      • {c} - channel
      • {a} - angles
  • 时间点、通道和角度可以以分隔列表的形式给出,或者以更优雅的方式给出,{start}-{end}:{interval}
  • 安排可以从文件中读取或手动输入
  • 数据容器,较小的图像堆栈可以使用 ArrayImg,更大的图像堆栈应使用 CellImg

Mvr define3

如果您选择了该选项,将显示找到的文件列表Mvr define4

定义数据集 3/3

最后,该插件会向您显示从文件中读取或要求的安排。 Mvr define5

日志文件输出

Dimensions of viewsetup 0 unknown. Loading them ...
Image stack size of first stack: 1388x1040x81
Dimensions of viewsetup 1 unknown. Loading them ...
Image stack size of first stack: 1388x1040x91
Dimensions of viewsetup 2 unknown. Loading them ...
Image stack size of first stack: 1388x1040x102
Dimensions of viewsetup 3 unknown. Loading them ...
Image stack size of first stack: 1388x1040x91
Dimensions of viewsetup 4 unknown. Loading them ...
Image stack size of first stack: 1388x1040x101
Dimensions of viewsetup 5 unknown. Loading them ...
Image stack size of first stack: 1388x1040x91
Dimensions of viewsetup 6 unknown. Loading them ...
Image stack size of first stack: 1388x1040x111
(Thu Aug 21 13:35:38 CEST 2014): Saved xml '/Users/janosch/no_backup/HisYFP/./dataset_orig.xml'.